Browsing by Subject "Computational fluid dynamics"

Now showing 1 - 4 of 4
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    Computational fluid dynamic analysis of bioprinted self-supporting perfused tissue models
    (Wiley, 2020-03) Sego, T. J.; Prideaux, Matthew; Sterner, Jane; McCarthy, Brian Paul; Li, Ping; Bonewald, Lynda F.; Ekser, Burcin; Tovar, Andres; Smith, Lester Jeshua; Anatomy and Cell Biology, School of Medicine
    Natural tissues are incorporated with vasculature, which is further integrated with a cardiovascular system responsible for driving perfusion of nutrient‐rich oxygenated blood through the vasculature to support cell metabolism within most cell‐dense tissues. Since scaffold‐free biofabricated tissues being developed into clinical implants, research models, and pharmaceutical testing platforms should similarly exhibit perfused tissue‐like structures, we generated a generalizable biofabrication method resulting in self‐supporting perfused (SSuPer) tissue constructs incorporated with perfusible microchannels and integrated with the modular FABRICA perfusion bioreactor. As proof of concept, we perfused an MLO‐A5 osteoblast‐based SSuPer tissue in the FABRICA. Although our resulting SSuPer tissue replicated vascularization and perfusion observed in situ, supported its own weight, and stained positively for mineral using Von Kossa staining, our in vitro results indicated that computational fluid dynamics (CFD) should be used to drive future construct design and flow application before further tissue biofabrication and perfusion. We built a CFD model of the SSuPer tissue integrated in the FABRICA and analyzed flow characteristics (net force, pressure distribution, shear stress, and oxygen distribution) through five SSuPer tissue microchannel patterns in two flow directions and at increasing flow rates. Important flow parameters include flow direction, fully developed flow, and tissue microchannel diameters matched and aligned with bioreactor flow channels. We observed that the SSuPer tissue platform is capable of providing direct perfusion to tissue constructs and proper culture conditions (oxygenation, with controllable shear and flow rates), indicating that our approach can be used to biofabricate tissue representing primary tissues and that we can model the system in silico.
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    Mechanisms of axis-switching and saddle-back velocity profile in laminar and turbulent rectangular jets
    (2013-08) Chen, Nan; Yu, Huidan (Whitney); Nalim, M. Razi; Zhu, Likun; Anwar, Sohel
    We numerically investigate the underlying physics of two peculiar phenomena, which are axis-switching and saddle-back velocity profile, in both laminar and turbulent rectangular jets using lattice Boltzmann method (LBM). Previously developed computation protocols based on single-relaxation-time (SRT) and multiple-relaxation-time (MRT) lattice Boltzmann equations are utilized to perform direct numerical simulation (DNS) and large eddy simulation (LES) respectively. In the first study, we systematically study the axis-switching behavior in low aspect-ratio (AR), defined as the ratio of width over height, laminar rectangular jets with AR=1 (square jet), 1.5, 2, 2.5, and 3. Focuses are on various flow properties on transverse planes downstream to investigate the correlation between the streamwise velocity and secondary flow. Three distinct regions of jet development are identified in all the five jets. The 45° and 90° axis-switching occur in characteristic decay (CD) region consecutively at the early and late stage. The half-width contour (HWC) reveals that 45° axis-switching is mainly contributed by the corner effect, whereas the aspect-ratio (elliptic) feature affects the shape of the jet when 45° axis-switching occurs. The close examinations of flow pattern and vorticity contour, as well as the correlation between streamwise velocity and vorticity, indicate that 90° axis-switching results from boundary effect. Specific flow patterns for 45° and 90° axis-switching reveal the mechanism of the two types of axis-switching respectively. In the second study we develop an algorithm to generate a turbulent velocity field for the boundary condition at jet inlet. The turbulent velocity field satisfies incompressible continuity equation with prescribed energy spectrum in wave space. Application study of the turbulent velocity profile is on two turbulent jets with Re=25900. In the jets with AR=1.5, axis-switching phenomenon driven by the turbulent inlet velocity is more profound and in better agreement with experimental examination over the laminar counterpart. Characteristic jet development driven by both laminar and turbulent inlet velocity profile in square jet (AR=1) is also examined. Overall agreement of selected jet features is good, while quantitative match for the turbulence intensity profiles is yet to be obtained in future study. In the third study, we analyze the saddle-back velocity profile phenomenon in turbulent rectangular jets with AR ranging from 2 to 6 driven by the developed turbulent inlet velocity profiles with different turbulence intensity (I). Saddle-back velocity profile is observed in all jets. It has been noted that the saddle-back's peak velocities are resulted from the local minimum mixing intensity. Peak-center difference &Deltapc and profound saddle-back (PSB) range are defined to quantify the saddle-back level and the effects of AR and I on saddle-back profile. It is found that saddle-back is more profound with larger AR or slimmer rectangular jets, while its relation with I is to be further determined.
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    Modeling and design optimization of a microfluidic chip for isolation of rare cells
    (2013-12) Gannavaram, Spandana; Zhu, Likun; Yu, Huidan (Whitney); Xie, Jian; Anwar, Sohel
    Cancer is still among those diseases that prominently contribute to the numerous deaths that are caused each year. But as technology and research is reaching new zeniths in the present times, cure or early detection of cancer is possible. The detection of rare cells can help understand the origin of many diseases. The current study deals with one such technology that is used for the capture or effective separation of these rare cells called Lab-on-a-chip microchip technology. The isolation and capture of rare cells is a problem uniquely suited to microfluidic devices, in which geometries on the cellular length scale can be engineered and a wide range of chemical functionalizations can be implemented. The performance of such devices is primarily affected by the chemical interaction between the cell and the capture surface and the mechanics of cell-surface collision and adhesion. This study focuses on the fundamental adhesion and transport mechanisms in rare cell-capture microdevices, and explores modern device design strategies in a transport context. The biorheology and engineering parameters of cell adhesion are defined; chip geometries are reviewed. Transport at the microscale, cell-wall interactions that result in cell motion across streamlines, is discussed. We have concentrated majorly on the fluid dynamics design of the chip. A simplified description of the device would be to say that the chip is at micro scale. There are posts arranged on the chip such that the arrangement will lead to a higher capture of rare cells. Blood consisting of rare cells will be passed through the chip and the posts will pose as an obstruction so that the interception and capture efficiency of the rare cells increases. The captured cells can be observed by fluorescence microscopy. As compared to previous studies of using solid microposts, we will be incorporating a new concept of cylindrical shell micropost. This type of micropost consists of a solid inner core and the annulus area is covered with a forest of silicon nanopillars. Utilization of such a design helps in increasing the interception and capture efficiency and reducing the hydrodynamic resistance between the cells and the posts. Computational analysis is done for different designs of the posts. Drag on the microposts due to fluid flow has a great significance on the capture efficiency of the chip. Also, the arrangement of the posts is important to contributing to the increase in the interception efficiency. The effects of these parameters on the efficiency in junction with other factors have been studied and quantified. The study is concluded by discussing design strategies with a focus on leveraging the underlying transport phenomena to maximize device performance.
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    Towards a high performance parallel library to compute fluid flexible structures interactions
    (2015-04-08) Nagar, Prateek; Song, Fengguang; Zhu, Luoding; Mukhopadhyay, Snehasis
    LBM-IB method is useful and popular simulation technique that is adopted ubiquitously to solve Fluid-Structure interaction problems in computational fluid dynamics. These problems are known for utilizing computing resources intensively while solving mathematical equations involved in simulations. Problems involving such interactions are omnipresent, therefore, it is eminent that a faster and accurate algorithm exists for solving these equations, to reproduce a real-life model of such complex analytical problems in a shorter time period. LBM-IB being inherently parallel, proves to be an ideal candidate for developing a parallel software. This research focuses on developing a parallel software library, LBM-IB based on the algorithm proposed by [1] which is first of its kind that utilizes the high performance computing abilities of supercomputers procurable today. An initial sequential version of LBM-IB is developed that is used as a benchmark for correctness and performance evaluation of shared memory parallel versions. Two shared memory parallel versions of LBM-IB have been developed using OpenMP and Pthread library respectively. The OpenMP version is able to scale well enough, as good as 83% speedup on multicore machines for <=8 cores. Based on the profiling and instrumentation done on this version, to improve the data-locality and increase the degree of parallelism, Pthread based data centric version is developed which is able to outperform the OpenMP version by 53% on manycore machines. A distributed version using the MPI interfaces on top of the cube based Pthread version has also been designed to be used by extreme scale distributed memory manycore systems.